3/10/2024 0 Comments Imagej fiji control cameraThey are trained on-the-fly from small collections of pixels provided by the user. Texture Snake This plugin implements active contours to segment structures with similar intensity distribution and low contrast with the background. Their subdivision-based representation allows for an intuitive manipulation of the curves through control points. Active Subdivision Surface This plugin implements active surfaces to segment biomedical volumes They adapt the resolution of their curve to the level of details of their target. They adapt the resolution of their curve to the level of details of their target. Subdivision Snake This plugin implements fast active contours for biomedical image segmentation. It allows to catch details of intricate shapes. Through the interface, one can locally increases the degrees of freedom of the curves. Locally Refinable Snake This plugin implements fast active contours for biomedical image segmentation. They are robust to membrane gaps and to high levels of noise. A quick preview function is available.Īctive Tessellation This plugin implements active contours to segment cell aggregates. merge or refine) and export the segments to the ROI manager. It works with graylevel, color or vector-valued images. Potts Segmentation The plug-in implements a segmentation algorithm based on the Potts model. They have a better orientation selectivity than the classical gradient or Hessian-based detectors. The filters are steerable and are based on the optimization of a Canny-like criterion. Feature Detector The Icy Feature Detector plug-in implements a series of optimized contour and ridge detectors. The package provides fast 2D and 3D filters for image preprocessing, and a framework to create and evolve snakes defined by a set of control points. Active Cells SDK This is a package for Icy that encapsulates tools to design and implement parametric active contours. The software allows one to manage several active contours simultaneously, and to have synchronized 2D and 3D viewers simultaneously. Their representation in terms of spline surfaces allows for a natural and intuitive manipulation of the surface. Active Cells 3D This is a plug-in for Icy that implements fast active surfaces for 3D image segmentation. The software allows one to manage several active contours simultaneously, and to keep record of their location and size through the ROI persistence capability of Icy. Their representation in terms of spline curves allows for a natural and intiutive manipulation of the active contour through control points. Java | Accessible on Icy | BIG Snake teamĪctive Cells This is a plug-in for Icy that implements fast active contours for image segmentation. The current version has five different models: the Gaussian model, the simulated defocus, the scalar-based diffraction model Born & Wolf, the scalar-based diffraction model with 3 layers Gibson & Lanni, and finally, the vectorial-based model Richards & Wolf. PSF Generator PSF Generator is a piece of software that allows to generate and visualize various 3D models of a microscope PSF. At this stage, DeconvolutionLab2 includes a friendly user interface to run the following algortihms: Regularized Inverse Filter, Tikhonov Inverse Filter, Naive Inverse Filter, Richardson-Lucy, Richardson-Lucy Total Variation, Landweber (Linear Least Squares), Non-negative Least Squares, Bounded-Variable Least Squares, Van Cittert, Tikhonov-Miller, Iterative Constraint Tikhonov-Miller, FISTA, ISTA. Inquisitive minds inclined to peruse the code will find it fosters the understanding of deconvolution. It includes the tool for a complete validation pipeline. The backbone of our software architecture is a library that contains the number-crunching elements of the deconvolution task. Java | Accessible on big| Daniel Sage | GPLv3ģD Deconvolution Microscopy DeconvolutionLab2 is freely accessible and open-source for 3D deconvolution microscopy it can be linked to well-known imaging software platforms, ImageJ, Fiji, ICY, Matlab, and it runs as a stand-alone application.
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